신경생물물리실험실

Download

Fiji plug-in

To download Fiji plug-in for quantitative analysis of mRNA localization, click here.

After download is complete, unzip the zip file.

The Fiji Plug-in was developed by Jeoung Yoon Bae.

(Undergraduate Student, Seoul National University Department of Physics and Astronomy,

Email: bjy23@snu.ac.kr)

And its original matlab version is described in the following paper with detailed information about the derivation and applications.

“An Unbiased Analysis Method to Quantify mRNA Localization Reveals Its Correlation with Cell Motility.”, Cell Reports (2012), Park, H. Y., Trcek, T., Wells, A., Chao, J. A., and Singer, R. H. 

*plug-in works only for Windows.

 

HybTrack : A hybrid single particle tracking software using manual and automatic detection of dim signals

MABTLAB based software for tracking single particles using manual and automatic detection

Seoul National University Department of Physics and Astronomy.

HybTrack is available in https://github.com/bhlee1117/HybTrack/

We provide 3 versions of HybTrack: GUI, script, and compiled standalone versions. The GUI and script versions require MATLAB installation. The compiled standalone version does not need full MATLAB, but just the MATLAB compiler runtime (MCR). To run HybTrack.exe, please download and install MATLAB R2016b (9.1) Runtime available at https://www.mathworks.com/products/compiler/matlab-runtime.html. If you have further questions, please contact bhlee1117@gmail.com.

If you find this software useful in your research, please cite our paper:
Lee, B. H. and Park, H. Y. (2018). HybTrack: A Hybrid Single Particle Tracking Software Using Manual and Automatic Detection of Dim SignalsScientific Reports, 8, 212.

Thank you for your interest.